openBIS for Data Analytics: Navigating ELN-LIMS openBIS with Jupyter & pyBIS (openBIS Python Module)

oBIS data analytics online-011
11.07.2025
2.5 hrs
  • 11.07.2025, 09:00 - 11:30
End of registration period: 09.07.2025
Online course
  • Kuzyakiv,?Rostyslav
8
10
free of charge

The course is offered as part of ETH Scientific IT Service's mandate to provide research data management support for scientists at ETH Zurich. For details see: https://sis.id.ethz.ch/services/#research-data-management

Topics covered:

  • ELN-LIMS openBIS, openBIS JupyterHub Server
  • Jupyter (basics) and pyBIS (an openBIS Python Module: https://pypi.org/project/PyBIS/ )
  • Get started with openBIS Jupyter Notebooks: download/upload datasets, basic plotting, and register projects, experiments, and steps using pyBIS.

This course will cover the basics of scientific data management and analysis using Jupyter Notebook and pyBIS within the ELN-LIMS openBIS framework.

A test openBIS server will be available to participants on the course day.
English
Experimental scientists working in research labs (master and PhD students, postdocs, staff scientists). The course is also open to openRDM.swiss customers.
This hands-on course is designed for advanced beginners and intermediate programmers with basic Python knowledge, aiming to enhance their skills in data management and analysis using Jupyter with ELN-LIMS openBIS and openBIS JupyterHUB
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